Molekulaarinen kasvibiologia, Turun yliopisto
Molecular Plant Biology, University of Turku
Publications 2011 - 2015
Publications 2011
1995-2000 2001-2005 2006-2010 2011 2012 2013 2014 2015
Doctoral theses
Anna Lepistö 2011: NADPH-Dependent Thioredoxin System in Regulation of Chloroplast Functions. - Annales Universitatis Turkuensis, Series A I, Vol 422, 135 p. [G5] http://urn.fi/URN:ISBN:978-951-29-4695-2
Dalton Carmel 2011: Novel CO2 Regulated Proteins in Synechocystis PCC 6803. - Annales Universitatis Turkuensis, Series A I, Vol 434, 118 p. [G5] http://urn.fi/URN:ISBN:978-951-29-4695-2
Original publications
Allahverdiyeva, Y.; Ermakova, M.; Eisenhut, M.; Zhang, PP.; Richaud*, P.; Hagemann*, M.; Cournac*, L.; & Aro, EM. 2011: Interplay between flavodiiron proteins and photorespiration in Synechocystis sp. PCC 6803. - THE JOURNAL OF BIOLOGICAL CHEMISTRY 286(27):24007-24014. [A1] http://dx.doi.org/10.1074/jbc.M111.223289
Alperovitch-Lavy*, A.; Sharon*, I.; Rohwer*, F.; Aro, EM.; Glaser*, F.; Milo*, R.; Nelson*, N. & Béjà*, O. 2011: Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. - ENVIRONMENTAL MICROBIOLOGY 13(1): 24-32. [A1] http://dx.doi.org/10.1111/j.1462-2920.2010.02304.x
Battchikova, N.; Eisenhut, M. & Aro, EM. 2011: Cyanobacterial NDH-1 complexes: novel insights and remaining puzzles. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1807(8):935-944. [A2] http://dx.doi.org/10.1016/j.bbabio.2010.10.017
Battchikova, N.; Wei*, L.; Du*, L.; Bersanini, L.; Aro, EM. & Ma*, W. 2011: Identification of a novel Ssl0352 Protein (NdhS), essential for efficient operation of cyclic electron transport around photosystem I, in NADPH:Plastoquinone oxidoreductase (NDH-1) complexes of Synechocystis sp. PCC 6803. - THE JOURNAL OF BIOLOGICAL CHEMISTRY 286(42): 36992-37001. [A1] http://dx.doi.org/10.1074/jbc.M111.263780
Carmel, D.; Mulo, P.; Battchikova, N.; & Aro, EM. 2011: Membrane attachment of Slr0006 in Synechocystis sp. PCC 6803 is determined by divalent ions. - PHOTOSYNTHESIS RESEARCH 108(2-3): 241-245. [A1] http://dx.doi.org/10.1007/s11120-011-9662-0
Chehri*, K.; Salleh*, B.; Yli-Mattila, T.; Reddy*, KRN. & Abbasi*, S. 2011: Molecular characterization of pathogenic Fusarium species in cucurbit plants from Kermanshah province, Iran. - SAUDI JOURNAL OF BIOLOGICAL SCIENCES 18(4): 341-351. [A1] http://dx.doi.org/10.1016/j.sjbs.2011.01.007
Chen*, G.; Allahverdiyeva, Y.; Aro, EM.; Styring*, S. & Mamedov*, F. 2011: Electron paramagnetic resonance study of the electron transfer reactions in photosystem II membrane preparations from Arabidopsis thaliana - BIOCHIMICA ET BIOPHYSICA ACTA - Bioenergetics 1807(2): 205-215. [A1] http://dx.doi.org/10.1016/j.bbabio.2010.10.010
Chen*, KM.; Piippo, M.; Holmström, M.; Nurmi, M.; Pakula, E.; Suorsa, M. & Aro, EM. 2011: A chloroplast-targeted DnaJ protein AtJ8 is negatively regulated by light and has rapid turnover in darkness. - JOURNAL OF PLANT PHYSIOLOGY 168(15):1780-1783. [A1] http://dx.doi.org/10.1016/j.jplph.2011.04.001
Eser*, BE.; Das*, D.; Jaehong*, H.; Jones, PR. & Marsh*, ENG. 2011: Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: Investigation of kinetics and requirement for an external electron donor. - BIOCHEMISTRY 50(49): 10743-10750 [A1] http://dx.doi.org/10.1021/bi2012417
Grouneva, I.; Rokka, A. & Aro, EM. 2011: The thylakoid membrane proteome of two marine diatoms outlines both diatom-specific and species-specific features of the photosynthetic machinery. - JOURNAL OF PROTEOME RESEARCH 10(12): 5338-5353. [A1] http://dx.doi.org/10.1021/pr200600f
Gylle*, AM.; Rantamäki, S.; Ekelund*, NG. & Tyystjärvi, E. 2011: Fluorescence emission spectra of marine and brackish water ecotypes of Fucus vesiculosus and F. radicans sp. nov. (Phaeophyceae) reveal differences in light harvesting apparatus. - JOURNAL OF PHYCOLOGY 47(1): 98-105. [A1] http://dx.doi.org/10.1111/j.1529-8817.2010.00928.x
Hakala-Yatkin, M.; Sarvikas, P.; Paturi, P.; Mäntysaari, M.; Mattila, H.; Tyystjärvi, T.; Nedbal*, L. & Tyystjärvi, E. 2011: Magnetic field protects plants against high light by slowing down production of singlet oxygen. - PHYSIOLOGIA PLANTARUM 142(1): 26-34. [A1] http://dx.doi.org/10.1111/j.1399-3054.2011.01453.x
Hakala-Yatkin, M. & Tyystjärvi, E. 2011: Inhibition of Photosystem II by the singlet oxygen sensor compounds TEMP and TEMPD. - BIOCHIMICA ET BIOPHYSICA ACTA - Bioenergetics 1807(3): 243-250. [A1] http://dx.doi.org/10.1016/j.bbabio.2010.11.014
Hakkila, KM.; Nikander, PA.; Junttila, SM.; Lamminmäki, UJ. & Virta*, MP. 2011: Cd-specific mutants of mercury-sensing regulatory protein MerR, generated by directed evolution. - APPLIED AND ENVIRONMENTAL MICROBIOLOGY 77(17): 6215-6224. [A1] http://dx.doi.org/10.1128/AEM.00662-11
Hideg*, E.; Déak*, Z.; Hakala-Yatkin, M.; Karonen*, M.; Rutherford*, AW.; Tyystjärvi, E.; Vass*, I. & Krieger-Liszkay, A. 2011: Pure forms of the singlet oxygen sensors TEMP and TEMPD do not inhibit Photosystem II. - BIOCHIMICA ET BIOPHYSICA ACTA - BIOENERGETICS 1807(12): 1658-1661. [A1] http://dx.doi.org/10.1016/j.bbabio.2011.09.009
Ifuku*, K.; Endo*, T.; Shikanai*, T. & Aro, EM. 2011: Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits. - PLANT & CELL PHYSIOLOGY 52(9):1560-1568. [A2] http://dx.doi.org/10.1093/pcp/pcr098
Inoue*, S.; Ejima*, K.; Iwai*, E., Hayashi*, H.; Appel*, J.; Tyystjärvi, E.; Murata*, N. & Nishiyama*, Y. 2011: Protection by α-tocopherol of the repair of photosystem II during photoinhibition in Synechocystis sp. PCC 6803. - BIOCHIMICA ET BIOPHYSICA ACTA - Bioenergetics 1807(2): 236-241. [A1] http://dx.doi.org/10.1016/j.bbabio.2010.11.003
Järvi, S.; Suorsa, M.; Paakkarinen, V. & Aro, EM. 2011: Optimized native gel systems for separation of thylakoid protein complexes: novel super- and megacomplexes. - THE BIOCHEMICAL JOURNAL 439(2):207-214. [A1] http://dx.doi.org/10.1042/BJ20102155
Lehtimäki, N.; Shunmugam, S.; Jokela*, J.; Wahlsten*, M.; Carmel, D.; Keränen, M.; Sivonen*, K.; Aro, EM.; Allahverdiyeva, Y. & Mulo, P. 2011: Nodularin uptake and induction of oxidative stress in spinach (Spinachia oleracea). - JOURNAL OF PLANT PHYSIOLOGY 168(6): 594-600 [A1] http://dx.doi.org/10.1016/j.jplph.2010.09.013
Martiskainen*, J.; Kananavicius*, R.; Linnanto*, J.; Lehtivuori*, H.; Keränen, M.; Aumanen*, V.; Tkachenko*, N. & Korppi-Tommola*, J. 2011: Excitation energy transfer in the LHC-II trimer: from carotenoids to chlorophylls in space and time. - PHOTOSYNTHESIS RESEARCH 107(2): 195-207. [A1] http://dx.doi.org/10.1007/s11120-011-9626-4
Mitina*, GV.; Tokarev*, YS.; Movila*, AA. and Yli-Mattila T. 2011: Polymorphism of Beauveria bassiana (Deuteromycota: Hyphomycetes) strains isolated from Ixodes ricinus (Acari: Ixodidae) in Moldova . - TICKS AND TICK-BORNE DISEASES 2(1):50-54. [A1] http://dx.doi.org/10.1016/j.ttbdis.2010.10.005
Mulo, P. 2011: Chloroplast-targeted ferredoxin-NADP+ oxidoreductase (FNR): Structure, function and location. -BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1807(8): 927-934. [A2] http://dx.doi.org/10.1016/j.bbabio.2010.10.001
Philosof*, A.; Battchikova, N.; Aro, EM. & Béjà*, O. 2011: Marine cyanophages: tinkering with the electron transport chain. - THE ISME JOURNAL 5(10):1568-1570. [A1] http://dx.doi.org/10.1038/ismej.2011.43
Pollari, M.; Rantamäki, S.; Huokko, T.; Kårlund-Marttila, A.; Virjamo, V; Tyystjärvi, E. & Tyystjärvi, T. 2011: Effects of deficiency and overdose of group 2 Sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803. - JOURNAL OF BACTERIOLOGY 193(1):265-273. [A1] http://dx.doi.org/10.1128/JB.01045-10 Free PMC article
Rajasärkkä*, J.; Hakkila, K. & Virta*, M. 2011: Developing a compound-specific receptor for bisphenol a by directed evolution of human estrogen receptor α. - BIOTECHNOLOGY AND ENGINEERING 108(11):2526-2534. [A1] http://dx.doi.org/10.1002/bit.23214
Rantamäki, S. & Tyystjärvi, E. 2011: Analysis of S2QA - charge recombination with the Arrhenius, Eyring and Marcus theories. - JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B: BIOLOGY 104(1-2):292-300. [A1] http://dx.doi.org/10.1016/j.jphotobiol.2011.03.013
Roda*, A.; Roda*, B.;Cevenini*, L.; Michelini*, E.; Mezzanotte*, L.; Reschiglian*, P.; Hakkila, K. & Virta*, M. 2011: Analytical strategies for improving the robustness and reproducibility of bioluminescent microbial bioreporters. - ANALYTICAL AND BIOANALYTICAL CHEMISTRY 401(1):201-211. [A1] http://dx.doi.org/10.1007/s00216-011-5091-3
Rodina*, E.; Vorobieva*, N.; Kurilova*, S.; Mikulovich*, J.; Vainonen, J.; Aro, EM. & Nazarova*, T. 2011: Identification of new protein complexes of Escherichia coli inorganic pyrophosphatase using pull-down assay. - BIOCHIMIE 93(9):1576-1583. [A1] http://dx.doi.org/10.1016/j.biochi.2011.05.023
Sharon*, I.; Battchikova, N.; Aro, EM.; Giglione*, C.; Meinnel*, T.; Glaser*, F.; Pinter*, R.Y.; Breitbart*, M.; Rohwer*, F.; & Béjà*, O. 2011: Comparative metagenomics of microbial traits within oceanic viral communities. -THE ISME JOURNAL 5(7):1178-1190. [A1] http://dx.doi.org/10.1038/ismej.2011.2
Siddiqui*, SA.; Valkonen*; JP.; Rajamäki*, ML. & Lehto, K. 2011: The 2b silencing suppressor of a mild strain of Cucumber mosaic virus alone is sufficient for synergistic interaction with Tobacco mosaic virus and induction of severe leaf malformation in 2b-transgenic tobacco plants. - MOLECULAR PLANT-MICROBE INTERACTIONS 24(6): 685-693. [A1] http://dx.doi.org/10.1094/MPMI-12-10-0290
Soitamo, AJ.; Jada, B. & Lehto, K. 2011: HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers. - BMC PLANT BIOLOGY 11(1): 68. [A1] http://dx.doi.org/10.1186/1471-2229-11-68 Free article
Tikkanen, M.; Grieco, M. & Aro, EM. 2011: Novel insights into plant light-harvesting complex II phosphorylation and 'state transitions'. - TRENDS IN PLANT SCIENCE 16(3):126-131. [A2] http://dx.doi.org/10.1016/j.tplants.2010.11.006
Trotta, A.; Konert, G.; Rahikainen, M.; Aro, EM. & Kangasjärvi, S. 2011: Knock-down of protein phosphatase 2A subunit B'γ promotes phosphorylation of CALRETICULIN 1 in Arabidopsis thaliana. - PLANT SIGNALING AND BEHAVIOR 6(11):1665-1668. [A1] http://dx.doi.org/10.4161/psb.6.11.17829
Trotta, A.; Wrzaczek*, M.; Scharte*, J.; Tikkanen, M.; Konert, G.; Rahikainen, M.; Holmström, M.; Hiltunen, HM.; Rips*, S.; Sipari*, N.; Mulo, P.; Weis*, E.; von Schaewen*, A.; Aro, EM. & Kangasjarvi, S. 2011: Regulatory subunit B'γ of protein phosphatase 2A prevents unnecessary defense reactions under low light in Arabidopsis. - PLANT PHYSIOLOGY 156(3):1464-1480. [A1]
http://dx.doi.org/10.1104/pp.111.178442 Free article
Tyystjärvi, E.; Nørremark*, M.; Mattila, H.; Keränen, M.; Hakala-Yatkin, M.; Otto Ottosen*, CO. & Rosenqvist*, E. 2011: Automatic identification of crop and weed species with chlorophyll fluorescence induction curves. - PRECISION AGRICULTURE 12:546–563. [A1] http://dx.doi.org/10.1007/s11119-010-9201-6
Yli-Mattila, T.; Ward*, TJ.; O'Donnell*, K.; Proctor*, RH.; Burkin*, AA.; Kononenko* GP.; Gavrilova*, OP.; Aoki*, T.; McCormick*, SP. & Gagkaeva*, TY. 2011: Fusarium sibiricum sp. nov, a novel type A trichothecene-producing Fusarium from northern Asia closely related to F. sporotrichioides and F. langsethiae. - INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY 147(1): 58-68. [A3] http://dx.doi.org/10.1016/j.ijfoodmicro.2011.03.007
Yodsang, P.; Raksajit*, W.; Brandt*, AM.; Salminen*, TA.; Mäenpää, P. & Incharoensakdi*, A. 2011: Recombinant polyamine-binding protein of Synechocystis sp. PCC 6803 specifically binds to and is induced by polyamines. - BIOCHEMISTRY-MOSCOW 76(6): 713-719. [A1] http://dx.doi.org/10.1134/S0006297911060137
Congress proceedings, book chapters, etc.
Battchikova, N.; Aro, EM. & Nixon*, PJ. 2011: Structure and physiological function of NDH-1 complexes in cyanobacteria. - In: Peschek, GA.; Obinger, C.; Renger, G. (eds.) Bioenergetic Processes of Cyanobacteria - From Evolutionary Singularity to Ecological Diversity. Berlin, Heidelberg, New York: Springer Verlag, 445-468, ISBN: 978-94-007-0352-0. [A3] http://dx.doi.org/10.1007/978-94-007-0388-9_16
Rokka, A.; Aro, EM. & Vener*, AV. 2011: Thylakoid phosphoproteins: identification of phosphorylation sites. In: Carpentier, R. (ed.) Photosynthesis Research Protocols - METHODS IN MOLECULAR BIOLOGY 684:171-86. - Humana Press, New York, Springer Science+Business Media ISBN 978-1-60761-924-6 [A3]. http://dx.doi.org/10.1007/978-1-60761-925-3_15
Sirpiö, S.; Suorsa, M. & Aro, EM. 2011: Analysis of thylakoid protein complexes by two dimensional electrophoretic systems. - In: Jarvis, RP. (ed.) Chloroplast Research in Arabidopsis, Volume II: Methods and Protocols. - METHODS IN MOLECULAR BIOLOGY 775:19-30. - Humana Press, New York, USA. ISBN 978-1-61779-236-6 [A3] http://dx.doi.org/10.1007/978-1-61779-237-3_2
Materials for teaching and training purpose, publications in newspapers e.g.
Brozinski*, A.; Lehto, H.; Rajala, K. & Lehto, K. (eds) 2011: Aikakirja. Aikavaellus-projekti, Turku, ISBN 978-951 29-4588-7 PrintOn 2011 Tallinna, 104 p. [D5]
Lehto, K. 2011: Aikavaellus kertoo Maailman, Maan ja eliökunnan historiaa. Suomalainen Kivi – kiven käytön erikoislehti 3/2011: 22-23. [E1]
Lehto, K.; Huoviala, P.; Mattila, H.; Nikkanen, L. & Paananen, P. 2011: Elämän synty. In: Brozinski, A., Lehto, H., Rajala, K., Lehto, K. (eds) Aikakirja. Aikavaellus-projekti, Turku pp. 32-41, PrintOn, Tallinna ISBN 978-951-29-4588-7 [E1]
Lehto, K. & Lehto H. 2011: Aikavaellus halki Maailmankaikkeuden, maan ja eliökunnnan historian. Alioartikkeli, Turun Sanomat 20.10.2011. [E1]
Tyystjärvi, E. 2011: Fotosynteesin varhaishistoria. - In: Brozinski, A., Lehto, H., Rajala, K. & Lehto, K. (eds) Aikakirja. Aikavaellus-projekti, Turku pp. 45-46, PrintOn, Tallinna ISBN 978-951-29-4588-7. [E1]
Virtanen, S. 2011: Aitotumaisten ja monisoluisten elämänmuotojen kehittyminen. In: Brozinski, A., Lehto, H., Rajala, K., Lehto, K. (eds) Aikakirja. Aikavaellus-projekti, Turku pp. 47-48, PrintOn, Tallinna ISBN 978-951-29-4588-7 [E1]
Publications 2012
1995-2000 2001-2005 2006-2010 2011 2012 2013 2014 2015
Doctoral theses
Sumathy Shunmugam 2012: Cyanobacteria from the Baltic Sea and Finnish lakes as an energy source and modulators of bioenergetic pathways. - Annales Universitatis Turkuensis, Series A I, Vol 438, 109 p. [G5] http://urn.fi/URN:ISBN:978-951-29-4969-4
Original publications
Antal, T.; Harju, E.; Pihlgren, L.; Lastusaari, M.; Tyystjärvi, T.; Hölsä, J. & Tyystjärvi, E. 2012: Use of near-infrared radiation for oxygenic photosynthesis via photon up-conversion. - INTERNATIONAL JOURNAL OF HYDROGEN ENERGY 37(10): 8859–8863 [A1] http://dx.doi.org/10.1016/j.ijhydene.2012.01.087
Campbell*, DA. & Tyystjärvi, E. 2012: Parameterization of photosystem II photoinactivation and repair. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1): 258-265. [A2] http://dx.doi.org/10.1016/j.bbabio.2011.04.010
Eisenhut*, M.; Georg*, J.; Klähn*, S.; Sakurai, I.; Mustila, H.; Zhang, PP.; Hess*, WR. & Aro, EM. 2012: The antisense RNA As1_flv4 in the cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. - THE JOURNAL OF BIOLOGICAL CHEMISTRY 287(40): 33153-33162. [A1] http://www.jbc.org/cgi/doi/10.1074/jbc.M112.391755 Free article
Erdmann* S.; Freihorst*, D.; Raudaskoski, M.; Schmidt-Heck*, W.; Jung*, EM.; Senftleben*, D. & Kothe*, E. 2012: Transcriptome and functional analysis: Mating in the basidiomycete Schizophyllum commune. - EUKARYOTIC CELL 11(5): 571-89. [A1] http://dx.doi.org/10.1128/EC.05214-11 Free PMC Article
Fujii, H. & Zhu*, JK. 2012: Osmotic stress signaling via protein kinases. - CELLULAR AND MOLECULAR LIFE SCIENCES 69(19): 3165-3173. [A2] http://dx.doi.org/10.1007/s00018-012-1087-1
Gollan, PJ.; Bhave*, M. & Aro, EM. 2012: The FKBP families of higher plants: Exploring the structures and functions of protein interaction specialists. - FEBS LETTERS 586(20): 3539-3547. [A2] http://dx.doi.org/10.1016/j.febslet.2012.09.002
Grieco, M.; Tikkanen, M.; Paakkarinen, V.; Kangasjärvi, S. & Aro, EM. 2012: Steady-state phosphorylation of light-harvesting complex II proteins preserves Photosystem I under fluctuating white light. - PLANT PHYSIOLOGY 160(4): 1896-1910. [A1] http://dx.doi.org/10.1104/pp.112.206466 Free Article
Guerrero, F.; Carbonell, V.; Cossu, M.; Correddu, D. & Jones, PR. 2012: Ethylene synthesis and regulated expression of recombinant protein in Synechocystis sp. PCC 6803. - PLOS ONE 7(11): e50470. [A1] http://dx.doi.org/10.1371/journal.pone.0050470 Free PMC article
Hebbelmann*, I.; Selinski*, J.; Wehmeyer*, C.; Goss*, T.; Voss*, I.; Mulo, P.; Kangasjärvi, S.; Aro, EM.; Oelze*, ML.; Dietz*, KJ.; Nunes-Nesi*, A.; Do*, PT.; Fernie*, AR.; Talla*, SK.; Raghavendra*, AS.; Linke*, V. & Scheibe*, R. 2012: Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase. - JOURNAL OF EXPERIMENTAL BOTANY 63(3): 1445-1459. [A1] http://dx.doi.org/10.1093/jxb/err386 Free article
Kangasjärvi, S.; Neukermans*, J.; Li*, S.; Aro, EM. & Noctor*, G. 2012: Photosynthesis, photorespiration, and light signalling in defence responses. - JOURNAL OF EXPERIMENTAL BOTANY 63(4): 1619-1636. [A2] http://dx.doi.org/10.1093/jxb/err402
Kobayashi*, K.; Baba*, S.; Obayashi*, T.; Sato*, M.; Toyooka*, K.; Keränen, M.; Aro, EM.; Fukaki*, H.; Ohta*, H.; Sugimoto*, K. & Masuda*, T. 2012: Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis. - THE PLANT CELL 24(3): 1081-1095. [A1] http://dx.doi.org/10.1105/tpc.111.092254
Kämäräinen, J.; Knoop*, H.; Stanford*, NJ.; Guerrero, F.; Akhtar, MK.; Aro, EM.; Steuer*, R. & Jones, PR. 2012: Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production. - JOURNAL OF BIOTECHNOLOGY 162(1): 67-74. [A1] http://dx.doi.org/10.1016/j.jbiotec.2012.07.193
Leino, H.; Kosourov*, S.; Saari*, S.; Sivonen*, K.; Tsygankov*, A.; Aro, EM. & Allahverdiyeva, Y. 2012: Extended H2 photoproduction by N2-fixing cyanobacteria immobilized in thin alginate films. - INTERNATIONAL JOURNAL OF HYDROGEN ENERGY 37(1): 151-161. [A1] http://dx.doi.org/10.1016/j.ijhydene.2011.09.088
Lepistö, A. & Rintamäki, E. 2012: Coordination of plastid and light signaling pathways upon development of Arabidopsis leaves under various photoperiods. - MOLECULAR PLANT 5(4): 799-816. [A2] http://dx.doi.org/10.1093/mp/ssr106 Free article
Lepistö, A.; Toivola, J.; Nikkanen, L. & Rintamäki, E. 2012: Retrograde signaling from functionally heterogeneous plastids. - FRONTIERS IN PLANT PHYSIOLOGY 3(286): 1-9. [A2] http://dx.doi.org/10.3389/fpls.2012.00286 Free article
Lintala, M.; Lehtimäki, N.; Benz*, JP; Jungfer*, A.; Soll*, J.; Aro, EM.; Bölter*, B. & Mulo, P. 2012: Depletion of leaf-type ferredoxin-NADP+ oxidoreductase results in permanent induction of photoprotective mechanisms in Arabidopsis chloroplasts. -THE PLANT JOURNAL 70(5): 809-817. [A1] http://dx.doi.org/10.1111/j.1365-313X.2012.04930.x
Mulo, P.; Sakurai, I. & Aro, EM. 2012: Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: From transcription to PSII repair. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1): 247-257. [A2] http://dx.doi.org/10.1016/j.bbabio.2011.04.011
Najafpour*, MM.; Moghaddam*, AN.; Yang*, YN.; Aro, EM.; Carpentier*, R.; Eaton-Rye*, JJ.; Lee*, CH. & Allakhverdiev, SI. 2012: Biological water-oxidizing complex: a nano-sized manganese-calcium oxide in a protein environment. - PHOTOSYNTHESIS RESEARCH 114(1): 1-13. [A2] http://dx.doi.org/10.1007/s11120-012-9778-x
Najafpour*, MM.; Rahimi*, F.; Aro, EM.; Lee*, CH. & Allakhverdiev*, SI. 2012: Nano-sized manganese oxides as biomimetic catalysts for water oxidation in artificial photosynthesis: a review. - JOURNAL OF THE ROYAL SOCIETY INTERFACE 9(75): 2383-2395. [A2] http://dx.doi.org/10.1098/rsif.2012.0412 Free PMC article
Nikkinen, HL.; Hakkila, K.; Gunnelius, L.; Huokko, T.; Pollari, M. & Tyystjärvi, T. 2012: The SigB σ factor regulates multiple salt acclimation responses of the cyanobacterium Synechocystis sp. PCC 6803. - PLANT PHYSIOLOGY 158(1): 514-23. [A1] http://dx.doi.org/10.1104/pp.111.190058
Raksajit*, W.; Satchasataporn*, K.; Lehto, K.; Mäenpää, P. & Incharoensakdi*, A: 2012: Enhancement of hydrogen production by the filamentous non-heterocystous cyanobacterium Arthrospira sp. PCC 8005. - INTERNATIONAL JOURNAL OF HYDROGEN ENERGY 37(24): 18791–18797. [A1] http://dx.doi.org/10.1016/j.ijhydene.2012.10.011
Raudaskoski, M.; Kothe*, E.; Fowler*, TJ.; Jung*, EM. & Horton*, JS. 2012: Ras and Rho small G proteins: insights from the Schizophyllum commune genome sequence and comparisons to other fungi. - BIOTECHNOLOGY & GENETIC ENGINEERING REVIEWS 28(1): 61-100. [A2] http://dx.doi.org/10.5661/bger-28-61
Sakurai, I; Stazic*, D.; Eisenhut*, M.; Vuorio, E.; Steglich*, C.; Hess*, WR. & Aro, EM. 2012: Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. - PLANT PHYSIOLOGY 160(2): 1000-1010. [A1] http://dx.doi.org/10.1104/pp.112.202127 Free article
Soitamo, AJ.; Jada, B. & Lehto, K. 2012: Expression of geminiviral AC2 RNA silencing suppressor changes sugar and jasmonate responsive gene expression in transgenic tobacco plants. - BMC PLANT BIOLOGY 12(204): 1-18. [A1] http://dx.doi.org/10.1186/1471-2229-12-204 Free PMC article
Suorsa, M.; Järvi, S.; Grieco, M.; Nurmi, M.; Pietrzykowska*, M.; Rantala, M.; Kangasjärvi, S.; Paakkarinen, V.; Tikkanen, M.; Jansson*, S. & Aro, EM. 2012: PROTON GRADIENT REGULATION5 is essential for proper acclimation of Arabidopsis Photosystem I to naturally and artificially fluctuating light conditions. - PLANT CELL 24(7): 2934-2948. [A1] http://dx.doi.org/10.1105/tpc.112.097162
Tikkanen, M. & Aro, EM. 2012: Thylakoid protein phosphorylation in dynamic regulation of photosystem II in higher plants. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1): 232-238. [A2] http://dx.doi.org/10.1016/j.bbabio.2011.05.005
Tikkanen, M.; Gollan, P.; Suorsa, M.; Kangasjärvi, S. & Aro, EM. 2012: STN7 operates in retrograde signaling through controlling redox balance in the electron transfer chain. - FRONTIERS IN PLANT PHYSIOLOGY 3(277): 1-11. [A2] http://dx.doi.org/10.3389/fpls.2012.00277 Free article
Tikkanen, M.; Grieco, M.; Nurmi, M.; Rantala, M.; Suorsa, M. & Aro, EM. 2012: Regulation of the photosynthetic apparatus under fluctuating growth light. - PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B 367(1608): 3486-3493 [A2] http://dx.doi.org/10.1098/rstb.2012.0067
Tikkanen, M.; Suorsa, M.; Gollan, P. & Aro, EM. 2012: Post-genomic insight into thylakoid membrane lateral heterogeneity and redox balance. - FEBS LETTERS 586(18): 2911-2916. [A2] http://dx.doi.org/10.1016/j.febslet.2012.07.035
Zhang, PP.; Eisenhut, M.; Brandt*, AM.; Carmel, D.; Silén, H.; Vass*, I.; Allahverdiyeva, Y.; Salminen*, T. & Aro, EM. 2012: Operon flv4-flv2 provides cyanobacterial Photosystem II with flexibility of electron transfer. - THE PLANT CELL 24(5): 1952-1971. [A1] http://dx.doi.org/10.1105/tpc.111.094417
Congress proceedings, book chapters, etc.
Allahverdiyeva, Y. & Aro, EM. 2012: Photosynthetic responses of plants to excess light: Mechanisms and conditions for photoinhibition, excess energy dissipation and repair - In: Eaton-Rye, JJ.; Tripathy, BC.; Sharkey, TD. (eds) Photosynthesis: Plastid Biology, Energy Conversion and Carbon Assimilation, Series: Advances in Photosynthesis and Respiration, Vol 34 SPRINGER, Dordrecht, The Netherlands, 275-297, ISBN 978-94-007-1578-3. [A3] http://dx.doi.org/10.1007/978-94-007-1579-0_13
Antal, T.; Krendeleva*, TE.; Pashchenko*, VZ.; Rubin*, AB.; Stensjo*, K.; Tyystjärvi, E.; Ramakrishna*, S.; Los*, DA.; Carpentier*, R.; Nishihara*, H. & Allakhverdiev*, SI. 2012: Photosynthetic Hydrogen Production: Mechanisms and Approaches. - In: Azbar, N. & Levin, DB. (eds.) State of the Art and Progress in Production of Biohydrogen. Bussum, The Netherlands, Bentham Science Publishers, 25-53, ISBN: 978-1-60805-411-4. [A3] http://dx.doi.org/10.2174/97816080522401120101
Aro, EM. 2012: Photosystem II - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1):1 [C2] http://dx.doi.org/10.1016/j.bbabio.2011.09.015
Kaewphan, S.; Kreula, S.; Van Landeghem*, S.; Van de Peer*, Y.; Jones, PR. & Ginter, F. 2012: Integrating Large-Scale Text Mining and Co-Expression Networks: Targeting NADP(H) Metabolism in E. coli with Event Extraction. - In: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pp. 8-15. Published only online by LREC Conferences. [A4] http://www.lrec-conf.org/proceedings/lrec2012/workshops/14.BioTxtM-Proceedings.pdf
Yli-Mattila, T. 2012: Morphological and Molecular Taxonomy of Highly Toxigenic Fusarium Species from Small Cereal Grains in Northern Europe and Asia. In: Misra, JK; Tewari, JP:; Deshmukh, SK. (eds.) Systematics and Evolution of Fungi, St. Helier, Jersey, UK, Science Publishers, an imprint of Edenbridge Ltd, 275-301, ISBN: 978-1-57808-723-5. [A3] http://dx.doi.org/10.1201/b11606-11
Publications 2013
1995-2000 2001-2005 2006-2010 2011 2012 2013 2014 2015
Doctoral theses
Susanne Rantamäki 2013: Biophysical modelling of photosynthetic electron transfer and practical applications to cyanobacteria. - Annales Universitatis Turkuensis, Series A I, Vol 457, 106 p. [G5] http://urn.fi/URN:ISBN: 978-951-29-5296-0
Original publications
Akhtar, MK.; Turner*, NJ. & Jones PR. 2013: Carboxylic acid reductase is a versatile enzyme for the conversion of fatty acids into fuels and chemical commodities. - PNAS 110(1): 87-92. [A1] http://dx.doi.org/10.1073/pnas.1216516110
Allahverdiyeva, Y.; Mustila, H.; Ermakova, M.; Bersanini, L.; Richaud*, P.; Ajlani*, G.; Battchikova, N.; Cournac*, L. & Aro, EM. 2013: Flavodiiron proteins Flv1 and Flv3 enable cyanobacterial growth and photosynthesis under fluctuating light. - PNAS 110(10): 4111-4116. [A1] http://dx.doi.org/10.1073/pnas.1221194110
Allahverdiyeva, Y.; Suorsa, M.; Rossi*, F.; Pavesi*, A.; Kater*, MM.; Antonacci*, A.; Tadini*, L.; Pribil*, M.; Schneider*, A.; Wanner*, G.; Leister*, D.; Aro, EM.; Barbato*, R. & Pesaresi*, P. 2013: Arabidopsis plants devoid of PsbQ and PsbR subunits of the oxygen-evolving complex show altered PSII supercomplex organization and short-term adaptive mechanisms. - Plant J. (in press). [A1] http://dx.doi.org/10.1111/tpj.12230
Antal*, TK.; Kukarskikh*, GP.; Bulychev*, AA.; Tyystjärvi, E. & Krendeleva* T. 2013: Antimycin A effect on the electron transport in chloroplasts of two Chlamydomonas reinhardtii strains. - PLANTA 237(5): 1241-1250. [A1] http://dx.doi.org/10.1007/s00425-013-1843-y
Ermakova, M.; Battchikova, N.; Allahverdiyeva, Y. & Aro, EM. 2013: Novel heterocyst-specific flavodiiron proteins in Anabaena sp. PCC 7120. - FEBS LETTERS 587(1): 82-87. [A1] http://dx.doi.org/10.1016/j.febslet.2012.11.006
Ferroni*, L.; Pantaleoni*, L.; Baldisserotto*, C.; Aro, EM. & Pancaldi*, S. 2013: Low photosynthetic activity is linked to changes in the organization of photosystem II in the fruit of Arum italicum. - PLANT PHYSIOLOGY AND BIOCHEMISTRY 63: 140-150. [A1] http://dx.doi.org/10.1016/j.plaphy.2012.11.023
Geiser*, DM.; Aoki*, T.; Bacon*, CW.; Baker*, SE.; Bhattacharyya*, MK.; Brandt*, ME.; Brown*, DW.; Burgess*, LW.; Chulze*, S.; Coleman*, JJ.; Correll*, JC.; Covert*, SF.; Crous* PW.; Cuomo*, CA.; De Hoog*, GS.; Di Pietro, A.; Elmer*, WH.; Epstein*, L.; Frandsen*, RJ.; Freeman*, S.; Gagkaeva*, T.; Glenn*, AE.; Gordon*, TR.; Gregory, NF.; Hammond-Kosack*, KE.; Hanson, LE.; Jímenez-Gasco Mdel*, M.; Kang*, S.; Kistler*, HC.; Kuldau*, GA.; Leslie*, JF.; Logrieco*, A.; Lu*, G.; Lysøe*, E.; Ma*, LJ.; McCormick*, SP.; Migheli*, Q.; Moretti*, A.; Munaut*, F.; O'Donnell*, K.; Pfenning*, L.; Ploetz*, RC.; Proctor*, RH.; Rehner*, SA.; Robert*, VA.; Rooney*, AP.; Bin Salleh*, B.; Scandiani*, MM.; Scauflaire*, J.; Short*, DP.; Steenkamp*, E.; Suga*, H.; Summerell*, BA.; Sutton*, DA.; Thrane*, U.; Trail*, F.; Van Diepeningen*, A.; Vanetten*, HD.; Viljoen*, A.; Waalwijk*, C.; Ward*, TJ.; Wingfield*, MJ.; Xu*, JR.; Yang*, XB.; Yli-Mattila, T. & Zhang, N. 2013: One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. - PHYTOPATHOLOGY 103(5): 400-408 [A2] http://dx.doi.org/10.1094/PHYTO-07-12-0150-LE
Grouneva, I.; Gollan, PJ.; Kangasjärvi, S.; Suorsa, M.; Tikkanen, M. & Aro, EM. 2013: Phylogenetic viewpoints on regulation of light harvesting and electron transport in eukaryotic photosynthetic organisms. - PLANTA 237(2): 399-412. [A2] http://dx.doi.org/10.1007/s00425-012-1744-5
Hanke*, G. & Mulo, P. 2013: Plant type ferredoxins and ferredoxin-dependent metabolism. - PLANT, CELL & ENVIRONMENT 36(6): 1071-1084. [A2] http://dx.doi.org/10.1111/pce.12046
Jada, B.; Soitamo, AJ. & Lehto, K. 2013: Organ-specific alterations in tobacco transcriptome caused by the PVX-derived P25 silencing suppressor transgene. - BMC PLANT BIOLOGY 13(8): 1-15. [A1] http://dx.doi.org/10.1186/1471-2229-13-8 Free article
Lehto, K.; Lehto, H.; Brozinski, A.; Gardner, E.; Eklund*, O.; Rajala, K.; Räsänen, M.; Sääksjärvi, I.; Vainio, L. & Vuorisalo, T. 2013: Time Trek: a 13.7 km long nature trail leading through the history of the Universe and the Earth. - INTERNATIONAL JOURNAL OF ASTROBIOLOGY 12(1): 1-7. [A1] http://dx.doi.org/10.1017/S1473550412000225
Pérez-Pérez*, JM.; Esteve-Bruna*, D.; González-Bayón*, R.; Kangasjärvi, S.; Caldana*, C.; Hannah*, MA.; Willmitzer*, L.; Ponce*, MR. & Micol*, JL. 2013: Functional redundancy and divergence within the Arabidopsis RETICULATA-RELATED gene family. - Plant Physiol. (in press). [A1] http://dx.doi.org/10.1104/pp.113.217323 Free article
Richter*, AS.; Peter* E.; Rothbart*, M.; Schlicke*, H.; Toivola, J.; Rintamäki, E. & Grimm*, B. 2013: Posttranslational influence of NTRC on enzymes in tetrapyrrole synthesis. - PLANT PHYSIOLOGY 162(1): 63-73. [A1] http://dx.doi.org/10.1104/pp.113.217141 Free article
Shunmugam, S.; Hinttala*, R.; Lehtimäki, N.; Miettinen*, M.; Uusimaa*, J.; Majamaa*, K.; Sivonen*, K.; Aro, EM. & Mulo, P. 2013: Nodularia spumigena extract induces upregulation of mitochondrial respiratory chain complexes in spinach (Spinacia oleracea L.). - ACTA PHYSIOLOGIAE PLANTARUM 35(3): 969-974. [A1] http://dx.doi.org/10.1007/s11738-012-1119-3
Sierla*, M.; Rahikainen, M.; Salojärvi*, J.; Kangasjärvi*, J. & Kangasjärvi, S. 2013: Apoplastic and chloroplastic redox signaling networks in plant stress responses. - ANTIOXIDANTS & REDOX SIGNALING 18(16): 2220-2239. [A2] http://dx.doi.org/10.1089/ars.2012.5016
Suorsa, M.; Grieco, M.; Järvi, S.; Gollan, PJ.; Kangasjärvi, S.; Tikkanen, M. & Aro, EM. 2013: PGR5 ensures photosynthetic control to safeguard photosystem I under fluctuating light conditions. - Plant Signal Behav (in press). [A2] http://dx.doi.org/10.4161/psb.22741
Tyystjärvi, E. 2013: Photoinhibition of Photosystem II. - International Review of Cell and Molecular Biology 300: 243–303. [A2] http://dx.doi.org/10.1016/B978-0-12-405210-9.00007-2
Tyystjärvi, T.; Huokko, T.; Rantamäki, S. & Tyystjärvi, E. 2013: Impact of different group 2 sigma factors on light use efficiency and high salt stress in the cyanobacterium Synechocystis sp. PCC 6803. - PLoS One 8(4): e63020. [A1] http://dx.doi.org/10.1371/journal.pone.0063020 Free PMC article
Congress proceedings, book chapters, etc.
Sirpiö S.; Kanervo, E. & Aro, EM. 2013: Assembly and Turnover of the D1 Protein.- In: Lennarz, WJ. and Lane, MD. (eds.) Encyclopedia of Biological Chemistry 2nd Edition. - Elsevier Inc. Academic Press., 508-511, ISBN 978-0123786302. [A3] http://dx.doi.org/10.1016/B978-0-12-378630-2.00227-9
Materials for teaching and training purpose, publications in newspapers e.g.
Lehto, K. 2013: Fotosynteesi pitää maailmaa elossa. - Turun Sanomat - Luonto. Verkkojulkaisu 13.5.2013. [E1] http://www.ts.fi/teemat/luonto/483089/Fotosynteesi+pitaa+maailman+elossa
Raudaskoski, M. & Salo*, V. 2013: Mitä olemme oppineet kantasienten genomista? - Sienilehti 65(1): 18-23. [E1]
Tikkanen, M.; Kangasjärvi, S. & Sandell, M. 2013: Edellytys elämälle. - Turun Sanomat - Luonto 13.5.2013 s. 19. [E1]